PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135332.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 531aa    MW: 59211.7 Da    PI: 9.0543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05101123123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_009135332.1 101 FVCEICNKGFQRDQNLQLHKRGH 123
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-5100123No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5100123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.907101123IPR007087Zinc finger, C2H2
SMARTSM003550.017101123IPR015880Zinc finger, C2H2-like
PfamPF121714.6E-5101123IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SMARTSM00355250143173IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.28E-5173198No hitNo description
SMARTSM00355180178198IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MMSKDILLHQ QVQQQQQEEN MSNLTSASGD QTSVSSGNRT EASGSNYFPH HQQQQQQQQQ  60
QQFFVPESQP QKKRRNQPGN PDPESEVIAL SPKTLMARNR FVCEICNKGF QRDQNLQLHK  120
RGHNLPWKLK QRSNKEVIRK KVYVCPEASC VHHDPTRALG DLTGIKKHFC RKHGDKKWKC  180
DKCSKKYAVQ SDCKAHSKTC GTKEYRCDCG TIFSRRDSFT THRAFCEALA KETAREVVIP  240
QEQNHQPNPI LVHQSTFHHQ HHHQAQPNMN FSSSSPSSHN IINTLHFEIN NNGTNNSNTS  300
SNHLHTFSVK KEQQQSNDHI INYHHQNIPP WLAPQDLTFS NPNPNNGGGG LFSLAASPAM  360
SATALLQKAA QMGSKKTPPL PPTTDFERSA HHNTLTTTMA AMMTSPSGYI SSNNNNQVLF  420
QGYNASDFDH HGGEEAFDDT FSAFLRTNAD TTTAGSDKKK SGGGGGVGEG LTRDFLGIRP  480
LMSHNEILSI AGLGNCISGA ASNQLHPKPW QGTQVGSTKD RDASRFAWWH V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127140KLKQRSNKEVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135327.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_009135328.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_009135329.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLM4CBE30.0M4CBE3_BRARP; Uncharacterized protein
STRINGBra001523.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11